12 Day Japan Itinerary – The Ultimate Trip Planning Guide

The essential 12 day Japan itinerary that is jam packed  with incredible food, culture, and fun.

Japan was high on my list of countries to visit for a long time and when I finally got to go there, it met my expectations in every way and was a dream trip come true.  Knowing everything that I went through in planning the trip, there were a lot of takeaways from my booking activities and hotels ahead of time, experience on the ground, and things I didn't expect along the way.  That's why I've put together this ultimate 12 day Japan itinerary and collected all of the “need to know before you go” tips in this travel guide.

12 Day Japan Itinerary Overview

When planning for Japan, I knew I wanted to try to get a good overview of the “best of the best” of the country.  So I knew that would have to include Tokyo and Kyoto but filling in the blanks was a challenge as there just wasn't that much online to go on.  It was a lot harder than other countries in part due to the difference in language and lack of English based sites.  Restaurants were also a hard part to figure out as I didn't really want to rely only on TripAdvisor's biases.  Luckily, I reached out to a local Japanese friend for real local recommendations and she was able to provide a ton of suggestions which worked out well.

The overall trip to Japan was a huge success as we got a combination of delicious foods, culture, history, outdoors and everything that goes with the big city of Tokyo.  I will say though that it was extremely hot and sticky in August.  That certainly weighed down on us on the day to day and found ourselves much more tired than usual.

If you've got 10-12 days only in Japan and want to see some of the best of the best, then you're in the right place.  Read on!

Japan 12 Day Itinerary

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What We Missed

At the end of the day, 12 days in Japan is just enough to explore the tip of the iceberg.  There were so many things we wanted to do but simply couldn't fit into the itinerary.  Thinking back on the trip, if I were to isolate the top 5 things we regret not doing, it'd be the following:

1. Climbing Mount Fuji – I was this close to doing it but alas the weather conditions weren't very favourable in August.
2. I wish I got to spend a little more time in Osaka itself.  We opted to switch out our day in Osaka with Nara since a friend said it would be nice out there.  Another night in Osaka also would've been nice to try out more food as Osaka is known to be the foodie capital of Japan.
3. Kobe is another place I regret not going to.  That mouth watering, butter-like quality beef lingers as an item I still have not been able to check off.  I couldn't include it due to the lack of days I had but if this is your priority, you should definitely try to fit it in.
4. Koyasan (Mount Koya) was another option as a day trip from Osaka but seemed too ambitious as a day trip.
5. Outside of Tokyo I also thought about doing Yokohama or Kamakura but ultimately I chose Hakone because I wanted a more authentic onsen experience.

Things you need to know before going to Japan

As you're planning out your trip to Japan, I can relate to how head-ache inducing it can be because there's either too much information or some of the information you're looking for on official sites aren't translated to English.  It's totally overwhelming.  Thinking about my own trip experiences, I captured a BIG LIST of things that I know will be useful for your very own 12 day itinerary to Japan.

All of Japan

Japan by Train – The JR Pass is pretty much a must if you're going to be travelling between major cities in Japan.  Read more about Japan by Rail.

Train Schedules – If there’s one site you need to know when travelling with a JR pass is www.hyperdia.com.  First of all, it’s English friendly so no need for complicated translations.  This is an excellent page to figure out the train schedules and since you know the Japanese railway system runs like clockwork you don’t need to worry about whether it’ll be early or late.   I used this on many occasions during the trip to figure out the most effective trains to take to get from point A to B.

• For example when going from Kyoto to Hiroshima most of the itineraries involved a transfer in Osaka which would waste time.  I played around with different departure times and eventually found a direct Shinkansen that ran from Kyoto to Osaka and then to Hiroshima.  No transfer required = less time = more sleep on the train.

ATM’s – If you have a foreign debit card like I did, you’re going to run into problems withdrawing from normal legit bank ATM’s.  For some reason these machines don’t take foreign cards.  The only machine that worked for me the entire trip was the 7-Eleven.  This one worked all the time.  So don't worry, it's not you when your debit card doesn't work anywhere else.  Just go over to any 7-Eleven which won’t be hard to find and you’ll be good to go.

Baggage Delivery Service – Look for Yamato either at the airport or anywhere in major cities to get it done.  They're fast, simple and reliable.  You can either use this service to ship bags from the airport to a city ahead of you so you don’t have to lug it around while taking the train.  You can also do what I did which was to ship my larger suitcase to my last destination in Japan.

Most Useful Website – Aside from my own of course ;), Japan Guide was probably the most useful site for Japan that rivalled even TripAdvisor and their forums.

Tuesdays – This one easily creeps up on you without you realizing.  There are many places including attractions and restaurants that are closed on Tuesdays so make sure to double-check.

Travel Advice on Tokyo

Tsukiji Fish Market Toyosu Fish Market

• NEW IN 2019 – Toyosu Market (豊洲市場) opened October 2018 and is the new site of the Tsukiji Fish Market.  Tuna auctions occur at 5:30 and 6:30AM and can be viewed from a few places – observation windows, observation deck (reservation required).  For a full guide on how to get into the Toyosu Fish Market Lottery and the full details about what the experience is like.
• How to get to the observation deck – Advance reservation is required to access this deck during the tuna auctions. Similar to before, there are 3 groups of 40 that are allowed in for 10 minutes at a time between 5:45AM and 6:15AM.  You must submit your application a month prior at a selected time.   It's a lottery system which is good and bad – good that you don't have to attempt in the morning and fail but bad in that it is possibly even more competitive because everyone will put their names in.
• Eat lots – Make sure you make it to the restaurants there.  Sushi Dai and Daiwa are the go-to places but expect to line up.  If you failed at going to the auction you might as well go straight to the restaurants.  These classics from Tsukiji Fish Market have been relocated to the new market.
• Seafood Intermediate Wholesaler’s Area – The area is off limits to visitors but they also have their own observation windows for viewing.  That said the views are quite narrow and limited.

Restaurant Reservations – For a lot of the well-known restaurants in Tokyo it’s important to make reservations a day in advance.  We did this for the entire trip and didn’t run into any problems.

Harajuku – One of the must-visit neighbourhoods of Tokyo.  It was a ton of fun to explore even when packed.  Filled with many boutique shops, girls in Lolita costumes, and many snacks.

• TIP:  To see Lolita girls, make sure you go on the weekend.

Hato Bus – This is a popular tour bus company that locals use and is just as well known for visitors.  Hato Bus is a great option in Tokyo because it saves you the hassle of figuring out public transit and allows you to see way more in one day than you would on foot.  They offer high quality tours that are quite affordable as well.  For the tour that we went on, it also came with a fabulous lunch in a zen park.

• TIP:  If you're doing the Hato Bus, just make sure you plan your itinerary around the tour so you don't end up redoing any sights.

Looking For Great Views? – If you're looking to go up a skyscraper with fantastic views of the city AND you want to do it for FREE, look no further than the Tokyo Metropolitan Government Building is the one you want to go to.  Based on personal experience though, the one thing to note is that the views from the top are somewhat limited. I feel that Tokyo Tower or Tokyo Skytree would offer better views but those have paid admission.

Best Shrine – If there’s one shrine you want to go to in Tokyo, I would recommend Meiji Shrine.  My #2 would probably be the one in Asakusa.

Recommended Restaurant – Gonpachi is a must-do restaurant in Tokyo.  Make reservations!  It’s the restaurant that inspired the epic restaurant scene in Kill Bill.

Odaiba – I wouldn’t necessarily recommend Odaiba to first time visitors of Tokyo but if you're looking to do some shopping and want to hang out at as a local for shopping and entertainment arcades, you can definitely make the trip out to this man-made island.

Day trips – Tokyo is massive and so if you're looking for a great day-trip recommendation, check out foodie destinations like Kichijoji which is well known for their street food.

Where to Stay – Here are my recommendations for top 4 picks in the city that caters to all budgets.  If you want more recommendations, make sure to take a look at the in-depth neighbourhood guide and best places to stay in Tokyo.

Travel Advice on Osaka

Hotels in Osaka – Accommodations aren't the easiest to find in Japan but Hostel 64 Osaka was recommended by my Japanese friend and it sure was a winner.  Highly recommended for their spacious rooms, location, service, and breakfast.  It has many of the hostel qualities but out of all hostels I have ever stayed at, this has to be #1.

Foodie Paradise – Come to Osaka for the food.  There’s just so many options here and things seem more accessible here than in Tokyo.

Where to Stay – Even with only a couple of days here, you'll need to find a good place to stay as a base of operations whether you're doing Osaka, Nara, or any of the other outlying cities.

Travel Advice on Nara

Is Nara Worth It? – Without seeing much of Osaka outside of Dotonbori I can’t really say whether Nara was better than Osaka or not but it’s definitely a side trip worth doing.  The deer experience alone made it worthwhile.

Travel Advice on Kyoto

Ryokans – One of the must-try things in Kyoto is to stay at a traditional ryokan.  Ryokans are a type of traditional Japanese inn that has existed since the eighth century.  For something on the budget side of things Ryokan Shimizu is perfect.  It’s clean, it has its own en-suite bathroom, and is close to transportation.  Get the ryokan experience for a fraction of the cost.

Higashiyama District – You can easily spend a full day in the Higashiyama Area and I would highly recommend it if you have 2 days to work with.  This is the area where you'll be able to see Kiyomizu-dera and Yasaka Shrine.

Plan Wisely – Something you should note as you plan your trip is that special buildings such as temples, shrines, and castles close between 4PM-5PM.  This means that if you don't want to run risk of being shut out of any places, it makes sense to do these sights earlier in the day.

Fushimi Inari – Now what's unique about this cascade of red torii gates is that there's no official closing time here so when planning your day, slot this towards the end of the day so you can still see your temples, shrines and castles and then round out the day exploring Fushimi Inari.  For the photographers out there, Fushimi Inari is absolutely stunning for photos.

Where to Stay – Kyoto has an interesting mix of accommodations that makes it one that you really have to do some research for.  As mention above, there are the traditional ryokans that most of you will undoubtedly want to try here.  I pick out the best affordable ryokans in Kyoto but what are others you should consider?  We also have an detailed Kyoto where to stay and neighbourhood guide that you should use for your trip planning.

Travel Advice on Hiroshima

I'm glad we were able to fit in Hiroshima as part of this 12 day itinerary of Japan.  For more details about places to go, make sure to head to the top 5 things to do in Hiroshima.

Photography at Miyajima – One thing that people say about photographing Miyajima and the floating torii is that you have to decide whether you want to shoot it with the tide up or down.  I didn’t have the luxury of choosing when I went so this was a non-factor for me but if you want to shoot it at high tide, go in the morning.  If you want to see it at low tide and be able to walk right up to the gate, you'll want to be there in the late afternoon.  Of course the time of the year matters as well but the tide trend should stay the same.

Why Hiroshima? – Hiroshima is definitely something not to miss if you’re going to be in the Osaka region.  Even if you’re not a WWII history buff, the atomic bomb history is thoroughly interesting and of course Miyajima is beautiful.

Remembering – The atomic bomb monuments, museums, and park can done in half a day so if you have a full day in Hiroshima, you can easily do both the atomic bomb memorials and Miyajima island.  If you're looking for a tour, this full day tour that combines Hiroshima with Miyajima is excellent.

Where to Stay – When in Hiroshima, you'll need a few nights stay so here are my top picks for the city.  I have a full guide on where to stay in Hiroshima but for a few quick recommendations take a look below.

Travel Advice on Hakone

Hakone Free Pass – If you’re going to be going to Hakone and going to do the round-the-city tour like we did, this is the one to get.  5000 JPY can’t be beat.  Get an earlier start than we did and in one day you can pretty much see all the main sights and activities in Hakone.

Hot Springs for Couples – Do your research beforehand and if you’re not sure, ask your concierge if you have any questions or get them to call to get the answers.  If you're looking for hot springs for couples, they are rare in Hakone.  The onsen we ended up choosing  was Tenzan and they had them available but only for 2 hour time slots.  On top of that, you can only reserve them when you get there.  There are only 3 or 4 of these type of rooms but you only get one temperature pool and that’s it.  We opted to go to the regular onsen area as we wanted to experience it to its fullest (nude and all).

12 day Japan itinerary in photos

The visuals really tell the story of why it was so easy to fall in love with Japan in a matter of 12 days.  Here's a glimpse of the things I was able to capture.